PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199267.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 678aa MW: 74310.9 Da PI: 9.1351

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.5e-08	579	628	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_019199267.1 579 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 628 678999******************9776668************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MVFQKRLDYG FDGYQVPPIP RSTRSTRKRG GSWRKADVNH VCAFDLLATV AGNLLLEGEN 60 TASAKEHSVL MKDCIKEEEK TMQEKPCDQG SSERGFFLSE LVSQAPMLSN CSSELPLAQN 120 DTLSAPASGI TTSECSEKFA TMEHLVNGGN KLELGSLNRK ADLDVSGCKV FPNRKLGFEF 180 GKPGSKGLVN DDNKAGGICI SGFPVLGTRK PSTLVCSDDS VKLTPPKDHI SCVSFPVKRD 240 DVKLGSRDDD ENSSGCTQPS KVFRQAQPYI EDRKSGKYPE VNPKSNDEEH LNADNSKNSL 300 KHQRSLKDYP FKKRKLYDCS SSVSISDVGI RNDGICSCPS KRYNGDDASS YTLTLPSAHP 360 VAGTSSSAAG ESSSFRSGDS QVKLRIKSFR IPELFIEIPE TATVGSLKRT VMEAVTTILG 420 GGLRVGVLFQ GKKVRDDSKT LLQTGICHDN KLNAVGFTLE PNPSQDPPPP MCPKEHPYLL 480 SRDSPQPLSR YPSSPSVIHN AVQRGPNSAL PNPRGTSSVI NFFESDHDSA PSPPPDILLN 540 KSAADSRALV AVPSGNAEPP SVAPARKPKR SETAQRRIRR PFSVSEVEAL VQAVEKLGTG 600 RWRDVKMRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLAAHAYWS 660 QQQTKQQMKH HSATCFLL

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MVFQKRLDYG FDGYQVPPIP RSTRSTRKRG GSWRKADVNH VCAFDLLATV AGNLLLEGEN  60
TASAKEHSVL MKDCIKEEEK TMQEKPCDQG SSERGFFLSE LVSQAPMLSN CSSELPLAQN  120
DTLSAPASGI TTSECSEKFA TMEHLVNGGN KLELGSLNRK ADLDVSGCKV FPNRKLGFEF  180
GKPGSKGLVN DDNKAGGICI SGFPVLGTRK PSTLVCSDDS VKLTPPKDHI SCVSFPVKRD  240
DVKLGSRDDD ENSSGCTQPS KVFRQAQPYI EDRKSGKYPE VNPKSNDEEH LNADNSKNSL  300
KHQRSLKDYP FKKRKLYDCS SSVSISDVGI RNDGICSCPS KRYNGDDASS YTLTLPSAHP  360
VAGTSSSAAG ESSSFRSGDS QVKLRIKSFR IPELFIEIPE TATVGSLKRT VMEAVTTILG  420
GGLRVGVLFQ GKKVRDDSKT LLQTGICHDN KLNAVGFTLE PNPSQDPPPP MCPKEHPYLL  480
SRDSPQPLSR YPSSPSVIHN AVQRGPNSAL PNPRGTSSVI NFFESDHDSA PSPPPDILLN  540
KSAADSRALV AVPSGNAEPP SVAPARKPKR SETAQRRIRR PFSVSEVEAL VQAVEKLGTG  600
RWRDVKMRAF DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLAAHAYWS  660
QQQTKQQMKH HSATCFLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	315	LKDYPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-133	MYB_related family protein