PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199472.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 193aa    MW: 21336.9 Da    PI: 8.0857
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY237.82.4e-73101674170
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                      ++se+vCyv+CnfC+tilavsvP +s+f++vtvrCGhC++llsvn+    q l+ +++        +++e+k++++n +    +++s+s+ ++ 
  XP_019199472.1  10 STTSERVCYVHCNFCTTILAVSVPCSSMFTIVTVRCGHCANLLSVNMGSLLQPLPLHQD--------IQNEQKQQQSNNEDGSGSSSSSSKCNKF 96 
                     5789*******************************************999999998886........6666666666666666667777777777 PP

           YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +++ e+e+ pr  p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_019199472.1  97 APFDSPEHEQQPRLAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 167
                     78899999999*9999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MDISSSSSSS TTSERVCYVH CNFCTTILAV SVPCSSMFTI VTVRCGHCAN LLSVNMGSLL  60
QPLPLHQDIQ NEQKQQQSNN EDGSGSSSSS SKCNKFAPFD SPEHEQQPRL APIRPPEKRQ  120
RVPSAYNRFI KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLNLD NNKQAKIDHA  180
VGGEGPQKSL GLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-69YABBY family protein