PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199473.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 190aa    MW: 20965.5 Da    PI: 8.3042
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY223.75.1e-69101644170
           YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
                      ++se+vCyv+CnfC+tilavsvP +s+f++vtvrCGhC++llsvn+    q l+ +++        +++++++++e+ +    +++s+s+ ++ 
  XP_019199473.1  10 STTSERVCYVHCNFCTTILAVSVPCSSMFTIVTVRCGHCANLLSVNMGSLLQPLPLHQD--------IQKQQQSNNEDGS---GSSSSSSKCNKF 93 
                     5789******************************************9999999998876........3333333332222...222333333344 PP

           YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +++ e+e+ pr  p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_019199473.1  94 APFDSPEHEQQPRLAP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164
                     4567788888999999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MDISSSSSSS TTSERVCYVH CNFCTTILAV SVPCSSMFTI VTVRCGHCAN LLSVNMGSLL  60
QPLPLHQDIQ KQQQSNNEDG SGSSSSSSKC NKFAPFDSPE HEQQPRLAPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLNLDNNK QAKIDHAVGG  180
EGPQKSLGLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-73YABBY family protein