PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199474.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 157aa    MW: 17564.7 Da    PI: 8.8901
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199474.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY181.74.2e-56113131170
           YABBY  31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrv 125
                     +f++vtvrCGhC++llsvn+    q l+ +++        +++e+k++++n +    +++s+s+ ++   +++ e+e+ pr  p irPPekrqrv
  XP_019199474.1   1 MFTIVTVRCGHCANLLSVNMGSLLQPLPLHQD--------IQNEQKQQQSNNEDGSGSSSSSSKCNKFAPFDSPEHEQQPRLAP-IRPPEKRQRV 86 
                     699*****************999999998886........666666666666666666777777777778899999999*9999.9********* PP

           YABBY 126 PsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     PsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  XP_019199474.1  87 PSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 131
                     *******************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MFTIVTVRCG HCANLLSVNM GSLLQPLPLH QDIQNEQKQQ QSNNEDGSGS SSSSSKCNKF  60
APFDSPEHEQ QPRLAPIRPP EKRQRVPSAY NRFIKEEIQR IKASNPDISH REAFSTAAKN  120
WAHFPHIHFG LNLDNNKQAK IDHAVGGEGP QKSLGLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-53YABBY family protein