PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199478.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 247aa MW: 26375.2 Da PI: 6.827

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00037	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H XP_019199478.1 74 YECKTCNRSFPSFQALGGHRASH 96 99**********99999998887 PP
2	zf-C2H2	11.5	0.00091	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C Fs+ L H+r+H XP_019199478.1 141 HECSICRAEFSSGQALGGHMRRH 163 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MATMEFSQEI SYVHHSPTYS TEEDEDMAAN CLILLAQGGC RVKQVAAAAG KISSRKFSEM 60 ATGGGKAAAG LYVYECKTCN RSFPSFQALG GHRASHKKPK LMDHHEHHHQ DHYDQQSPPP 120 PQPQPPLSAA HGGSSKLAKI HECSICRAEF SSGQALGGHM RRHRPAAPIN TAAAAKGGSV 180 SSSNDEEATE SSDGVGGNPR AAVFSLDLNL PAPQEEEEGG HGNKFEFSAK QQQSLVFSVP 240 ALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-44	C2H2 family protein