PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199609.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

E2F/DP

Protein Properties

Length: 439aa MW: 48889.5 Da PI: 4.6383

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	87.4	1.1e-27	115	180	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l+++se+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg XP_019199609.1 115 RYDSSLGLLTKKFINLIKHSEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 180 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MQQQQQAIKR RQQLPFTAAK PPFGDYHRFA ALPPQAPEGI VVKTPPLKRK NETAKNSLGS 60 GYYGANSPFQ TPVSGKAGKA QKSSRTSKAN ISAFQTAGNA ESPSSNNATP IGPCRYDSSL 120 GLLTKKFINL IKHSEDGILD LNKAADTLEV QKRRIYDITN VLEGIGLIEK KLKNRIQWKG 180 LDVSRTGEDE GVASLQAEVE NLTLEERRID EQIREMQERL RDLSEDENNQ RWLFVSEEDI 240 KNIPIFQDQT LIAIKAPHGT TLEVPDPDEA VDYLQRRYRI VLRSTMGPID VYLVSQFEEK 300 YEEMGAVAAP PNNPSTSGAD NNATAKLEIE KSRVNEVERQ ENETETIPSD LGTSEDFMGG 360 IMKIVPDIDN ETDYWFMSDH TGITAIWEDS HLADLASFDW SDLITVNEDH ATTNVSTPHA 420 QTSPPTFPEL PCATNTTIS

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MQQQQQAIKR RQQLPFTAAK PPFGDYHRFA ALPPQAPEGI VVKTPPLKRK NETAKNSLGS  60
GYYGANSPFQ TPVSGKAGKA QKSSRTSKAN ISAFQTAGNA ESPSSNNATP IGPCRYDSSL  120
GLLTKKFINL IKHSEDGILD LNKAADTLEV QKRRIYDITN VLEGIGLIEK KLKNRIQWKG  180
LDVSRTGEDE GVASLQAEVE NLTLEERRID EQIREMQERL RDLSEDENNQ RWLFVSEEDI  240
KNIPIFQDQT LIAIKAPHGT TLEVPDPDEA VDYLQRRYRI VLRSTMGPID VYLVSQFEEK  300
YEEMGAVAAP PNNPSTSGAD NNATAKLEIE KSRVNEVERQ ENETETIPSD LGTSEDFMGG  360
IMKIVPDIDN ETDYWFMSDH TGITAIWEDS HLADLASFDW SDLITVNEDH ATTNVSTPHA  420
QTSPPTFPEL PCATNTTIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-143	E2F/DP family protein