PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199837.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 195aa MW: 22164.1 Da PI: 5.7572

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92	2.9e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRrng++KKA+ELSvLCd++vav+ifss+gkly++ss XP_019199837.1 9 KRIEDKSSRQVTFSKRRNGLIKKAKELSVLCDVDVAVVIFSSSGKLYDFSS 59 79***********************************************96 PP
2	K-box	35.9	3.2e-13	101	158	41	98
K-box 41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e+ ++Ls+ +L +Leqq+ ++l + Rs+Kn ll+e+i +l +kek+l++e+++L++++ XP_019199837.1 101 EEPDQLSVTDLVHLEQQIGSALLETRSRKNCLLMESIAHLHEKEKMLEDEKRRLEEQI 158 55589**************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MGRRKVEIKR IEDKSSRQVT FSKRRNGLIK KAKELSVLCD VDVAVVIFSS SGKLYDFSST 60 NSLTGVLQRY NSHVETEEKQ SNYSRYMTIG ELVQTLESDI EEPDQLSVTD LVHLEQQIGS 120 ALLETRSRKN CLLMESIAHL HEKEKMLEDE KRRLEEQISG IKKDREEVNE MGVDFTSLAT 180 VVGTQQQAAA TLNLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65070.1	6e-44	MIKC_MADS family protein