PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199881.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 29165.7 Da    PI: 8.1917
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.8e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  XP_019199881.1  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59
                    79***********************************************86 PP
2K-box102.27e-34751741100
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y++++ +s++++ + s++ e+akLk+++e Lqr+qRh+ GedL+sLslkeLq+Le+qL+++lk+iRskKn+l++e+i+ lqkk k+lq++n++L+
  XP_019199881.1  75 YAERQLNSTDQNSQGSWTLEHAKLKARMEVLQRNQRHYEGEDLDSLSLKELQNLERQLDSALKNIRSKKNQLMYESISVLQKKDKALQDQNNQLS 169
                     677889999999999******************************************************************************** PP

           K-box  96 kklee 100
                     kk++e
  XP_019199881.1 170 KKIKE 174
                     **987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYATE  60
SCMEKILERY ERYSYAERQL NSTDQNSQGS WTLEHAKLKA RMEVLQRNQR HYEGEDLDSL  120
SLKELQNLER QLDSALKNIR SKKNQLMYES ISVLQKKDKA LQDQNNQLSK KIKEREKEMA  180
TQQQQQQEVQ WEQPNDDINS SYVVPPPLVH LSSEGEYQGE GEYGETEGTQ RQQQNNTSAM  240
PQWMLSHLQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-98MIKC_MADS family protein