PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199885.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28081.9 Da PI: 9.0814

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_019199885.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	100.2	2.8e-33	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++++ ++e+ +Lk+++e Lqr+qR+llGedL++Ls keL+qLe+qLe slk+iRs+K++ +l+q+ elq++e++l e nk Lr+klee XP_019199885.1 82 QPASDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGPLSTKELEQLENQLEASLKQIRSRKTQSMLDQLAELQQREQMLAESNKLLRRKLEE 173 567889***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMMKTLERY QRCSYAHLEA NQPASDTQNN YHEYLRLKAR VELLQRSQRN LLGEDLGPLS 120 TKELEQLENQ LEASLKQIRS RKTQSMLDQL AELQQREQML AESNKLLRRK LEENVAGIPL 180 RLSWEDGNQE IHQQNRQLPP QSEGFFQPLG LNISGQIGYN SVGTDEVNVA ASAHNISGFF 240 PGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	4e-99	MIKC_MADS family protein