PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199889.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 622aa MW: 71168 Da PI: 7.8468

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.3	1.9e-16	61	147	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Yn+YA +vGFsvr+ k+++++ +++++++ f Csk g+++ + k+ ++ rtgC ++ +++++ w v+k e+ Hn el+p XP_019199889.1 61 DMYNDYAFRVGFSVRRGKQRYTSATKTMKTKMFHCSKDGFKRITGKE----CYSKIAGRTGCGGFVQFVLHENEMWIVSKHEKLHNNELVP 147 58**************************************98887....889999***************************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MALPSPITAA PEKSWMIRLR SSMWRRQQIT DPVGVADTED VNPADQDLVG MSVCSVDEAY 60 DMYNDYAFRV GFSVRRGKQR YTSATKTMKT KMFHCSKDGF KRITGKECYS KIAGRTGCGG 120 FVQFVLHENE MWIVSKHEKL HNNELVPPSK SYLLRSHKMV SRNHISYHTD LKSSGVSVAA 180 GVRFLKTQSG GSPLVGFTSR DAYNSLCTDA LNRLDGTDSN TLIEIFKRRQ SSERDFYFDF 240 EVDLESRSMD YKSPQSIMTD QCAAMAAAIV QVFLSSRHRL CIWHIGENSK KHIKGLRNQK 300 DFLDIFNCLL KYTDTEAEFE FYWTRMVTTY KCHNNHWIEK LYGCREKWCP AFNKDYFSGG 360 ILSSQRSETT NHSISRRLSK TSGLCDFYNS FVGVISEWRS RENGEDVLCS QGVPTMVMDN 420 VKILLHARKI YTIEIYYLFE EQFLKGGSCY QECVMLENGV YKYHVWRPDV DIIRHEVIFN 480 SRQMDIGCSC KLFTELRILC CHCLRILNVH CVSEVPEKKF QRLAVYSQEN IEGRKICEEA 540 IADAKRILEA ECGGSLFEEC DIGSSSGVIK DPSTRRMKGL RNRRSQVEDD ILNITGDGYL 600 VHPSSGGSSF CHVSTMSSME DN

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MALPSPITAA PEKSWMIRLR SSMWRRQQIT DPVGVADTED VNPADQDLVG MSVCSVDEAY  60
DMYNDYAFRV GFSVRRGKQR YTSATKTMKT KMFHCSKDGF KRITGKECYS KIAGRTGCGG  120
FVQFVLHENE MWIVSKHEKL HNNELVPPSK SYLLRSHKMV SRNHISYHTD LKSSGVSVAA  180
GVRFLKTQSG GSPLVGFTSR DAYNSLCTDA LNRLDGTDSN TLIEIFKRRQ SSERDFYFDF  240
EVDLESRSMD YKSPQSIMTD QCAAMAAAIV QVFLSSRHRL CIWHIGENSK KHIKGLRNQK  300
DFLDIFNCLL KYTDTEAEFE FYWTRMVTTY KCHNNHWIEK LYGCREKWCP AFNKDYFSGG  360
ILSSQRSETT NHSISRRLSK TSGLCDFYNS FVGVISEWRS RENGEDVLCS QGVPTMVMDN  420
VKILLHARKI YTIEIYYLFE EQFLKGGSCY QECVMLENGV YKYHVWRPDV DIIRHEVIFN  480
SRQMDIGCSC KLFTELRILC CHCLRILNVH CVSEVPEKKF QRLAVYSQEN IEGRKICEEA  540
IADAKRILEA ECGGSLFEEC DIGSSSGVIK DPSTRRMKGL RNRRSQVEDD ILNITGDGYL  600
VHPSSGGSSF CHVSTMSSME DN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-24	FAR1 family protein