PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199992.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 257aa MW: 27438.6 Da PI: 7.1241

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.2e-39	52	153	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_019199992.1 52 PCGACKFLRRKCVSSCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 146 7*********************9989*************************************************************** PP DUF260 95 allkeel 101 a++++++ XP_019199992.1 147 AMVQTQI 153 99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MDAQSHPHSD GGGSSSAEAA PRRKCTGKRA APESGATPPP AAPVAAITIQ APCGACKFLR 60 RKCVSSCIFA PHFGSDQGAA RFAAVHKVFG ASNVSKLLLH IPANRRHDAV VTISYEAQAR 120 LSDPVYGCVS TILALQQQVA SLQAELAMVQ TQIMNSRFAV ANALQTSQQQ QQQQQQQHAV 180 AAAVLQPAYS NTSSASNNLL NISNFSSNFD LVGETTGAPH NSHCFDPIVQ LSHPSQEEEE 240 DEEQSHNPIA FTNHMFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	4e-57	LBD family protein