PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200152.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 330aa MW: 36840.2 Da PI: 9.4664

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.6e-17	67	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed+ll ++++q+G g+W++ +++ g+ R++k+c++rw +yl XP_019200152.1 67 KGPWSTKEDLLLTNYIQQHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL 114 79****************************99**********97 PP
2	Myb_DNA-binding	56.6	6e-18	120	165	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l XP_019200152.1 120 RGNFSQEEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 165 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MARTYLVSAL FIGLLLPSPV QSCLERKGAA TLSLLTNLWS FLSLSLFLEF GREMGRAPCC 60 SKEGLKKGPW STKEDLLLTN YIQQHGEGQW RSLPKKAGLL RCGKSCRLRW MNYLRPGIKR 120 GNFSQEEEDL IVRLHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHLLKKLK SSGIEPRKIV 180 ASKKKATKIV APKKPGDAKK KPKQQQQQRK ESDDNQRYKV YAPKAIRLSS GGVSRNNSVD 240 DIAGSVSSSS GEVENKAMAD GSSSSFIPWN LYELRDDFCA EVLTAAAAGD HLSPQCALPD 300 DCLLDKVYDE YLQLLSENCF LEDDPFGANL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-65	MYB family protein