PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200203.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 281aa MW: 31458.3 Da PI: 9.7915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.2e-13	101	153	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r +h e+Er+RR+++ + ++ Lr+llP ++K s ++ +A +YIk++q XP_019200203.1 101 KRIMHREIERQRRQEMATLYASLRSLLPLeY---VKGKRSTSDHMHEALNYIKQMQ 153 799************************77...9*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MFPLQRSEDL VFQILSTPDI PSQQNKISQD LIFDSNNINN NYGFAPLDFA TGAHHHDFAA 60 TTTASAAAVT ASSSRKRRRR EKTDDVAPAA AAKPDEYHKL KRIMHREIER QRRQEMATLY 120 ASLRSLLPLE YVKGKRSTSD HMHEALNYIK QMQKNVQELE RRRDGLKTAA ASSTSSSHNL 180 EKTKTGSPDQ KTGSPPNFVS VSRCRDGVEI LINSDVAGER GCFPLSRVLR TLQNQGVNVV 240 SCDSTKADTR LLHRVQSEVS GEKPIDLQAL QQKLTEVINN F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	79	RKRRR
2	75	82	RKRRRREK
3	75	101	RKRRRREKTDDVAPAAAAKPDEYHKLK
4	77	84	RKRRRREK
5	101	113	KRIMHREIERQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	3e-40	bHLH family protein