PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200204.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 216aa MW: 23715.8 Da PI: 8.7188

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.1	2.3e-41	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r ++++slvyeA++r+rdPvyG++g i++lqq+++ l+ael+ XP_019200204.1 43 PCAACKLLRRRCTQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPERQRAETANSLVYEANVRLRDPVYGCMGAISALQQKVQALQAELN 137 7********************************************************************************************** PP DUF260 96 llkee 100 ++k+e XP_019200204.1 138 AVKTE 142 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MSRERERYEE IGKKIKREHD DLSQMGRRPP PPPPGGTLNT ITPCAACKLL RRRCTQECPF 60 SPYFSPHEPH KFASVHKVFG ASNVSKMLME VPERQRAETA NSLVYEANVR LRDPVYGCMG 120 AISALQQKVQ ALQAELNAVK TEIMRYKFGE GTNNDINTII PSSHHHHANA SSLLTSGVVS 180 VAAPPPSSSS FYTPPPSSSS AADFGIVSSE NISYFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-75	LBD family protein