PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019200206.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 192aa    MW: 20700.5 Da    PI: 8.7333
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019200206.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.51.7e-41191181100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C+++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe +r ++++slvyeA++r+rdPvyG++g i++lqq+++ l+ael+
  XP_019200206.1  19 PCAACKLLRRRCTQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPERQRAETANSLVYEANVRLRDPVYGCMGAISALQQKVQALQAELN 113
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++k+e
  XP_019200206.1 114 AVKTE 118
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MGRRPPPPPP GGTLNTITPC AACKLLRRRC TQECPFSPYF SPHEPHKFAS VHKVFGASNV  60
SKMLMEVPER QRAETANSLV YEANVRLRDP VYGCMGAISA LQQKVQALQA ELNAVKTEIM  120
RYKFGEGTNN DINTIIPSSH HHHANASSLL TSGVVSVAAP PPSSSSFYTP PPSSSSAADF  180
GIVSSENISY FG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-68LBD family protein