PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200256.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 680aa MW: 77663.6 Da PI: 8.2064

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.7	2.5e-10	2	59	31	90
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + f+Csk g++ + + + ++ tr gC a+++ +dg w vtk ++ HnHel+ XP_019200256.1 2 KMFMCSKAGFKVKANAG--VRAYSKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 59 67*******998877..888899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MKMFMCSKAG FKVKANAGVR AYSKIDTRSG CGACVQFDVG EDGLWTVTKH VKVHNHELCA 60 VDKSHLLRSH RNVGDNQLLY LKDLKKSGVA MADGIRFLKH QAGGSPLVGF TNRDAYNSIA 120 SDTSKRLDGT DSNSLIEIFR KRQSTESDFF FDFEVDCDSR LCSFFWRDGR MRQDYELFGD 180 LLVHDTTYRT NKYDMICGPF VGMNHHCMNV MFGCGFLMNE RIESFVWLFR AFLRSMNGKC 240 PQTIMTDQCA SMAAAICQVF PTSRHRLCIW HIGENSKKHI KALRNNKDFL DMFNCVLKYT 300 ETEAEFEFYW TRLVTDYKCH KNSWIQKLYD CREKWCPAFN KDYFSGGILS SQRSETTNHS 360 ISRRLSKTAG LCDFYSSFVS VTSEWRSKEN GEDFRCTQGV PNMMMEHVKL LLHAREVYTI 420 EIYFLFEEQF MKGNVCHQEM VLNEGCQFKY HVWRPDIDII RHEVSFKLST LDISCSCKLI 480 SELGILCCHC LRILHIHCVS SIPNKYIMKR WTKKVADGRD VNTGSMFCRA GVPPSIWVVE 540 ICRKFQRLIS SSQDNSVTRQ FCDEAVEEAK KKVEAEIGYV QIEECGVSSS SGVIQNPSNR 600 RSKGERNVRR SSVIEKKYSA ARGRRSAANK VASSTKGAVQ SLVLESLSEI AGDGYLVHPS 660 SGSSEFCQYS NDVDDNAVVD

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MKMFMCSKAG FKVKANAGVR AYSKIDTRSG CGACVQFDVG EDGLWTVTKH VKVHNHELCA  60
VDKSHLLRSH RNVGDNQLLY LKDLKKSGVA MADGIRFLKH QAGGSPLVGF TNRDAYNSIA  120
SDTSKRLDGT DSNSLIEIFR KRQSTESDFF FDFEVDCDSR LCSFFWRDGR MRQDYELFGD  180
LLVHDTTYRT NKYDMICGPF VGMNHHCMNV MFGCGFLMNE RIESFVWLFR AFLRSMNGKC  240
PQTIMTDQCA SMAAAICQVF PTSRHRLCIW HIGENSKKHI KALRNNKDFL DMFNCVLKYT  300
ETEAEFEFYW TRLVTDYKCH KNSWIQKLYD CREKWCPAFN KDYFSGGILS SQRSETTNHS  360
ISRRLSKTAG LCDFYSSFVS VTSEWRSKEN GEDFRCTQGV PNMMMEHVKL LLHAREVYTI  420
EIYFLFEEQF MKGNVCHQEM VLNEGCQFKY HVWRPDIDII RHEVSFKLST LDISCSCKLI  480
SELGILCCHC LRILHIHCVS SIPNKYIMKR WTKKVADGRD VNTGSMFCRA GVPPSIWVVE  540
ICRKFQRLIS SSQDNSVTRQ FCDEAVEEAK KKVEAEIGYV QIEECGVSSS SGVIQNPSNR  600
RSKGERNVRR SSVIEKKYSA ARGRRSAANK VASSTKGAVQ SLVLESLSEI AGDGYLVHPS  660
SGSSEFCQYS NDVDDNAVVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-76	FAR1 family protein