PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200272.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 222aa MW: 25466.7 Da PI: 9.8205

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200272.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.7e-16	6	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++++G +W+ I++ g+ Rt+k+c++rw +yl XP_019200272.1 6 KGAWSPQEDRRLISYITKYGIWNWSQIPKFAGLARTGKSCRLRWKNYL 53 79****************99**********************97 PP
2	Myb_DNA-binding	38.1	3.5e-12	59	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e +v+ lG++ W++ a+ ++ gRt++++k++++++l XP_019200272.1 59 RGPFSVEEVEVIVRMYLSLGNR-WSAMAAQLP-GRTDNDIKNFYHTHL 104 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MVNLKKGAWS PQEDRRLISY ITKYGIWNWS QIPKFAGLAR TGKSCRLRWK NYLRPDVKRG 60 PFSVEEVEVI VRMYLSLGNR WSAMAAQLPG RTDNDIKNFY HTHLKKNLQE AVSVPVSSRR 120 SAAENCRKRT NKSKNDDNAP PPVNVVVVAE KPHHHSHDDH VLLDSSPGGF GNPNVARDQE 180 FHHPFTSVSA AMDRMSLSSE EDYDEDKSFW YNVLKKADDL KF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	3e-46	MYB family protein