PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019200364.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 249aa    MW: 28642.8 Da    PI: 9.0599
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019200364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35201122103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d++++ ++sws++++sfvv++  +++k++LpkyFkh+nf+SFvRQLn+YgF+k+++++         weF++  F +g+k+ll++
  XP_019200364.1  20 FLCKTYDMVDDPSTDAVVSWSKSNQSFVVWNVPRLTKDILPKYFKHNNFSSFVRQLNTYGFRKIDSDQ---------WEFANGGFLRGDKHLLKT 105
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k +
  XP_019200364.1 106 ISRRKPS 112
                     ****975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MVGVHKSTGG KAIANSPPPF LCKTYDMVDD PSTDAVVSWS KSNQSFVVWN VPRLTKDILP  60
KYFKHNNFSS FVRQLNTYGF RKIDSDQWEF ANGGFLRGDK HLLKTISRRK PSHSQVHQQP  120
QQVQRATVEP CIEVGMLGLV EEVDALKRDK DFLMQELVES RQHQQATDHM LQSVGQRVHL  180
MEQRRLEMMS FLAKAIQCPF FLAQFVHQQG DNNRCILGVD KKRRRLPTQE EENFVCKPVK  240
DCQVPASTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222226KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.11e-91HSF family protein