PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019200383.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 289aa    MW: 32439.1 Da    PI: 5.8656
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019200383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding483e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l  ++ q+G g+W++++   g++R +k+c++rw +yl
   XP_019200383.1 16 KGLWSPDEDQKLRSYILQHGHGCWSSVPINAGLKRNGKSCRLRWINYL 63
                     678*****************************9*************97 PP
2Myb_DNA-binding43.95.5e-1469114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E+e ++ ++ +lG++ W+ Ia++++ gRt++++k+ w++yl
   XP_019200383.1  69 RGSFSLQEEETILTLHGMLGNK-WSQIAQHLP-GRTDNEIKNCWHSYL 114
                      899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MGCKPAENKP KQKHKKGLWS PDEDQKLRSY ILQHGHGCWS SVPINAGLKR NGKSCRLRWI  60
NYLRPGLKRG SFSLQEEETI LTLHGMLGNK WSQIAQHLPG RTDNEIKNCW HSYLKKKVAR  120
MGETESQVKG ESSSMGNGDS SPHSLKSSSQ NSGLESFEQM EGSLTDTDQS VPEMDSSAKD  180
TQKSIFPKIL FAEWLSLDQF NNGQEFQNPS LAVPPKNTFG YNDSGFHDDF MQGLLYNEAA  240
AYDNNSNNIE PVPGDMFQPQ LKFEDQISDS GFPEFFSGGF DINDGILYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-63MYB family protein