PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019200484.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 755aa    MW: 83201.5 Da    PI: 6.0969
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019200484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2054109156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++eLe++F++n++p++++r eL ++l+L+ +qVk+WFqNrR+++k
  XP_019200484.1  54 RKKYHRHTPYQIQELESAFKENPHPDEKSRLELGRRLNLESKQVKFWFQNRRTQMK 109
                     7999*************************************************999 PP
2START170.31.3e-532634871206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                     ela +a++el+k+a+ +ep+W +s     e +n +e  ++f              + +ea rasg v+ +++ lve+l+d + +W+e+++    +
  XP_019200484.1 263 ELAFTAMNELLKLAEIGEPLWYRSLdgfgEALNLEEFDRTF----HsclgmrptnFITEATRASGTVIFNSMALVETLMDAN-RWSEMFTglvgR 352
                     57899********************5555444544444444....25677999999**************************.************ PP

                     EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
           START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                     a++++viss+      g+lqlm  elq lsplvp   + f+R+++q+ +g+w+ivdvSvd  ++ ++ +++  ++ lpSg+++++++ng+skv+w
  XP_019200484.1 353 ASIIDVISSNssgsrnGFLQLMHGELQILSPLVPiHHVKFLRFCKQHAEGVWAIVDVSVDMIREGTQPHEFPSCRILPSGCIVQDMPNGYSKVIW 447
                     ******************************************************************9999************************* PP

                     EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     + h++++++++h+ +r++++sg+ +ga++w+atlqrqce+
  XP_019200484.1 448 IQHMEYDDSTVHNFFRPMIRSGMGFGAQRWLATLQRQCEC 487
                     **************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    
MEGLGELGMI GENFDPGSMG RAREDEYESR SGSENFEGAS GDDQDTPGDK SSKRKKYHRH  60
TPYQIQELES AFKENPHPDE KSRLELGRRL NLESKQVKFW FQNRRTQMKT QLERHENAIL  120
KQENDKLRIE NIAMKEAMST PICNQCGGQA ILGEVHVEEH HLRIENARLR DELNRICVLA  180
NKFLGKPFSS FPGAMAPPAM ANSGLELAVG RNSFGGMNPV DSSLPLGLDF GNGISSGLPL  240
MSSRANPNMT GVEASYDKSV FMELAFTAMN ELLKLAEIGE PLWYRSLDGF GEALNLEEFD  300
RTFHSCLGMR PTNFITEATR ASGTVIFNSM ALVETLMDAN RWSEMFTGLV GRASIIDVIS  360
SNSSGSRNGF LQLMHGELQI LSPLVPIHHV KFLRFCKQHA EGVWAIVDVS VDMIREGTQP  420
HEFPSCRILP SGCIVQDMPN GYSKVIWIQH MEYDDSTVHN FFRPMIRSGM GFGAQRWLAT  480
LQRQCECLAV IMSSSMPSTD NSVVSHAGRR SIASLAQRMT RSFCAVVCGN IYKWEPIQTG  540
NGDDAARLNM RKSVGEPGEP PGVVLSATKT IWLPISRQHL FDFLRSEETR NQWDVLSNGT  600
LQQMIHISKG QDPANQISLY RNTASASVNQ NSMLILQESC NDISGSLIAY ASVGAPEMTM  660
VMNGGDSSCV ALLPSGFSIV PDCFNSSGWP DDHPKGTLPK EGGPGNNSTG ALLTVGFQML  720
VSSLPGAKLT LESVETVNAL ISRMVLDIKA AFHCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein