PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019200488.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 336aa    MW: 36570.3 Da    PI: 4.8313
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019200488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.3e-36291202102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d++++++isw+e+g+sf+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_019200488.1  29 FLTKTFQLVDDRSIDDVISWNEDGSSFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLCD 114
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_019200488.1 115 IQRRKV 120
                     ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MGPPVPPVER NGGETTAGGE AQRSVPTPFL TKTFQLVDDR SIDDVISWNE DGSSFIVWNP  60
TEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS NDCFRRGEKR LLCDIQRRKV  120
AAAAVAVPST AVTAAPATAT VTVTAVAAVP AQPSKTVTPS NSGEEQVVSS NSSPGTAAID  180
ASQGGSTSEL IGENERLRKE NIELNKELSQ MKSLCNNIYA LMSNYSGNNS NSSNQSAESS  240
LQSLKPLDLM PATATATAGC GGENQTEPDE MRARLFGVSI GSKRVREGED GSAEQDHDLR  300
LQQPGTDVKS EPENGEDNEE SPWLRQCHRQ NQRVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-91HSF family protein