PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200551.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 298aa MW: 32905.1 Da PI: 8.8027

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k++G g+W+t ++ g+ R++k+c++rw +yl XP_019200551.1 14 KGAWTKEEDERLIRYIKKHGEGCWRTLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	60.4	3.7e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++ XP_019200551.1 67 RGNFTEEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MGRSPCCEKE HTNKGAWTKE EDERLIRYIK KHGEGCWRTL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPQTHRAVS SAQNTAAADA ASPSAAVVPL ALSSSAKNLD QQQHETAAAG FLPWMRNTKA 180 ENSNNTSTTT EDSNSSSGLS SEEIVLHPAA AAAPLINLEL SISLPQPPAA PPSTTKLAGK 240 EFNDQTRKNH LFFSQRAVCL CYNLGFQNSN ACNCDKMMTT SSINAEAGMH SFYRPLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	2e-85	MYB family protein