PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019200555.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 250aa MW: 28556.6 Da PI: 6.9998

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019200555.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	179.9	2.2e-56	33	128	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkk++P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd+lwa++tlGfedyv+plk+yl+kyrelege XP_019200555.1 33 KEQDRFLPIANVGRIMKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAITTLGFEDYVNPLKLYLNKYRELEGE 127 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_019200555.1 128 K 128 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MEDDERHGNA PNVGLRASPE SSTCSKNNNN NNKEQDRFLP IANVGRIMKK AIPGNGKISK 60 DAKETVQECV SEFISFVTGE ASDKCQREKR KTINGDDILW AITTLGFEDY VNPLKLYLNK 120 YRELEGEKLN VPKQQQQQQH HQQQQNVVVD HQNSLNLAAV YNACSSNVYT SSNNSPAGLL 180 SHHPPYVSSS DHHLQPFLNL PFPTHQNTIQ AQFTQQEHIT FQKQERITFQ KQEHITFQKQ 240 EHIDSVGHWQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	3e-65	NF-YB family protein