PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020671695.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 352aa MW: 38385 Da PI: 8.2604

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020671695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.5	5e-40	125	201	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l +ak+yh+rhkvCe+hskap v+v g+eqrfCqqCsrfh + efD++krsCrrrLa+hnerrrk++ XP_020671695.1 125 RCQVEGCNKALVDAKDYHKRHKVCEMHSKAPCVVVLGVEQRFCQQCSRFHIVAEFDDSKRSCRRRLAGHNERRRKSS 201 6**************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MESGGGQARV GNGFGGFTAW GFCDPAAGSI VVEAETAVAP SSSSYGIPAI TIASTFGERG 60 VVPSRDHQHA TEGELYSYRQ QQQRQYLTCL KLGKRQYCGR GGAAELEEST ATKRSAPTAR 120 ALVPRCQVEG CNKALVDAKD YHKRHKVCEM HSKAPCVVVL GVEQRFCQQC SRFHIVAEFD 180 DSKRSCRRRL AGHNERRRKS SNGNPSLEST IMSTRFPIIS NSPTSALSLL SSTATPWASA 240 PELSSRSSAA LRELIAENRA TSFAKQLFSD RSSLPFMAQP SCASLSYDPH HHQFPFQIPA 300 APVNNGSGNH LTLDLMQLPS SSVDQFLSGR NKSKDEDEEC CEIWKSLEAH VV

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MESGGGQARV GNGFGGFTAW GFCDPAAGSI VVEAETAVAP SSSSYGIPAI TIASTFGERG  60
VVPSRDHQHA TEGELYSYRQ QQQRQYLTCL KLGKRQYCGR GGAAELEEST ATKRSAPTAR  120
ALVPRCQVEG CNKALVDAKD YHKRHKVCEM HSKAPCVVVL GVEQRFCQQC SRFHIVAEFD  180
DSKRSCRRRL AGHNERRRKS SNGNPSLEST IMSTRFPIIS NSPTSALSLL SSTATPWASA  240
PELSSRSSAA LRELIAENRA TSFAKQLFSD RSSLPFMAQP SCASLSYDPH HHQFPFQIPA  300
APVNNGSGNH LTLDLMQLPS SSVDQFLSGR NKSKDEDEEC CEIWKSLEAH VV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-36	SBP family protein