PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020671734.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 243aa MW: 28042.5 Da PI: 6.6688

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020671734.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw++yl XP_020671734.1 10 KGPWTEQEDLQLVCFVSLFGERRWDFIAKVSGLNRTGKSCRLRWFNYL 57 79********************************************97 PP
2	Myb_DNA-binding	54.9	2e-17	64	108	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++ XP_020671734.1 64 GRMTPQEERLILELHSEWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 108 89*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MVVVSEEIRK GPWTEQEDLQ LVCFVSLFGE RRWDFIAKVS GLNRTGKSCR LRWFNYLQPG 60 LKHGRMTPQE ERLILELHSE WGNRWSRIAR RLPGRTDNEI KNYWRTHMRK KAQERKKNSS 120 SSASTISTCL STHSASPLDA TTTKNEEDGS SLITEKESRE KEYAVNVYPM EQIWNDIASL 180 ESGGSSFAQC TVERCNLSCD PPPMTSPVQE HFVDYLWMMD DNEFSKIATS NDFRFLTSGI 240 IES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	2e-73	MYB family protein