PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020671760.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

M-type_MADS

Protein Properties

Length: 197aa MW: 22592.5 Da PI: 4.8665

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020671760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.6	1.2e-11	15	51	7	43
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 s r t+ R +gi KKA+ELSvLC+++v+ fs++ XP_020671760.1 15 SARINTYKSRIKGIEKKAKELSVLCGVDVLFCSFSPD 51 567789*************************999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MGRAKLQIRY REKPSARINT YKSRIKGIEK KAKELSVLCG VDVLFCSFSP DLSAFHYWPN 60 EPSEFHRIID RFKSISSQKP QCEVPSPPVN WSSQEELAAI NKKLEDVRQM KKFLEAEKMG 120 YSSQKCRADS IGADGDFCPN AAILKDEEDI FSLLEELGQD LFISDLPSNS SIDVFKESYF 180 DCRDNFFDAD PADFQFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-12	M-type_MADS family protein