PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020671891.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 314aa MW: 35538.5 Da PI: 7.2913

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020671891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.2e-06	161	180	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ XP_020671891.1 161 FSCPVCFKTFNRYNNLQMHM 180 89*****************9 PP
2	zf-C2H2	12.6	0.0004	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k F + + ++H +++ XP_020671891.1 245 FMCRKCSKAFAVRGDWRTHEKNC 267 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MVEPYTNFSM AYFNYHFLPS YPSLPAPYLP LLAPMDINNH LSPPSSPPVM EALPLLKDEK 60 DEEKKSSTVV NLLNDQDLVE DVESATVTLH IGLPSPNAAD LISSTVTSAQ EEGEKQGEES 120 GVDETAEVLL LRYPETLIGK LNKGQYWIPT PSQILIGPTQ FSCPVCFKTF NRYNNLQMHM 180 WGHGSQYRTG RQSLRGIQPT AMLKLPCYCC SPGCRNNIDH PRAKPLKDFR TLQTHYKRKH 240 GLKPFMCRKC SKAFAVRGDW RTHEKNCGKL WYCTCGSDFK HKRSLKDHVK AFGRDGHAAC 300 GVHCFDEDEE EEIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-118	C2H2 family protein