PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672160.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 393aa MW: 43675.6 Da PI: 9.563

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.3	6.8e-12	46	107	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse....ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+ n+ k+ ++ g + ++ Aa+a++ a++k++g XP_020672160.1 46 SVYRGVTRHRWTGRYEAHLWDkNSWnesqNKkgKQGAIYTGAYHDEDAAARAYDLAALKYWG 107 78*****************88886653336555677777777779***********98 PP
2	AP2	50	7.5e-16	150	201	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa a++ a+ +++g XP_020672160.1 150 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAATAYDIAAIEYRG 201 89**99******988422...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MAKRKQNSSM TNSESTNSNS NSSNGYMKMK RTRKSVPRES PLQRSSVYRG VTRHRWTGRY 60 EAHLWDKNSW NESQNKKGKQ GAIYTGAYHD EDAAARAYDL AALKYWGQET ILNFPLSAYQ 120 EEIREMQGQS KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VLGNKYLYLG 180 TYATQEEAAT AYDIAAIEYR GLNAVTNFDL SHYIKWLRPN SESSKVAAAA TTTTPTLQLM 240 NQSSPVRSSQ DAQLTLYHQP SPLPSFPQQI YGRIQSFHHI ESGALTNTTT AAAAAAATNA 300 NAAATTTNTS ALGLLLQSSK FKEMLERTTV MFDMSSASPE LSGKPSPRCS FPDDIQTYFE 360 CHDNGGFVEG DGTLFGELNA FGLASCFPMR ADI

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MAKRKQNSSM TNSESTNSNS NSSNGYMKMK RTRKSVPRES PLQRSSVYRG VTRHRWTGRY  60
EAHLWDKNSW NESQNKKGKQ GAIYTGAYHD EDAAARAYDL AALKYWGQET ILNFPLSAYQ  120
EEIREMQGQS KEEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VLGNKYLYLG  180
TYATQEEAAT AYDIAAIEYR GLNAVTNFDL SHYIKWLRPN SESSKVAAAA TTTTPTLQLM  240
NQSSPVRSSQ DAQLTLYHQP SPLPSFPQQI YGRIQSFHHI ESGALTNTTT AAAAAAATNA  300
NAAATTTNTS ALGLLLQSSK FKEMLERTTV MFDMSSASPE LSGKPSPRCS FPDDIQTYFE  360
CHDNGGFVEG DGTLFGELNA FGLASCFPMR ADI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	2e-89	AP2 family protein