PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672291.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 233aa MW: 25869.9 Da PI: 7.8814

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672291.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l +++ +G g +W + +++ g++R++k+c++rw++yl XP_020672291.1 14 RGPWSPEEDAALRSYIHNHGFGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	46.5	8.2e-15	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd+ + + ++ G++ W+ Ia++++ gRt++++k++w++ XP_020672291.1 69 GSFTKEEDDMIFTLYNKIGSR-WSVIASKLP-GRTDNDVKNHWNT 111 79*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAALRSYIH NHGFGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGS FTKEEDDMIF TLYNKIGSRW SVIASKLPGR TDNDVKNHWN TKLKKRVMEG 120 KASHSSSYQR SSIPLLSAQS LIPSAQASSS TSCVLTPAIG NQEFQSSYDS LDSSLQQEVY 180 RGGSEYGFLW ELDFGSITDL LSSSGFDDTI PSIWADDSGE GKLGELPQSV SYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	4e-69	MYB family protein