PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672352.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 524aa MW: 56697 Da PI: 8.1547

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.2e-11	153	177	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd CkF H+ XP_020672352.1 153 GEKDCAYYMMTRTCKFGDACKFDHP 177 7889********************8 PP
2	zf-CCCH	34.7	2.9e-11	204	230	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t CkyG +CkF+H++ XP_020672352.1 204 PGEPDCPYFLKTQKCKYGLNCKFNHPK 230 5789*********************96 PP
3	zf-CCCH	35.4	1.8e-11	257	281	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+a+tG Ck+G++CkF+H++ XP_020672352.1 257 EPVCAFYAKTGKCKFGGNCKFHHPK 281 789********************96 PP
4	zf-CCCH	36.5	8e-12	337	361	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_020672352.1 337 GETDCPFYLKTGSCKYGATCRYSHP 361 6789********************9 PP
5	zf-CCCH	34.8	2.7e-11	421	444	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+ +rC+F+H+ XP_020672352.1 421 EIECDYYMKTGQCKFAERCRFHHP 444 568********************8 PP
6	zf-CCCH	37.7	3.4e-12	476	499	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG+ C+F H+p XP_020672352.1 476 VACPFYMKTGTCKYGAMCRFDHPP 499 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MSNQIYYGST YTSGGVGGYT LRAADPYLPS AIGSSRYSTD GFAIADVGER TSSLSSSQTN 60 GLKLSSVEIR GVGGGGSYSL GKIGGAPTSM SWLGVDGLSD VGSKRSAEAL YNQSILAYNT 120 IGQSDALLSK YSLVKRPRVV SASHLPLYPE RPGEKDCAYY MMTRTCKFGD ACKFDHPIWV 180 PEGGIPDWKE VPHNPAPESL PERPGEPDCP YFLKTQKCKY GLNCKFNHPK EKLDSSTGVV 240 QSNEIYANSE LPERPSEPVC AFYAKTGKCK FGGNCKFHHP KDTLIQSAGK DIGSAANNEP 300 TTNNDNATNG YSKQTKTFIP FTPALWHNSK GLPIRPGETD CPFYLKTGSC KYGATCRYSH 360 PDRYLISTPV TANINNAIIT PPVATVPVGV INPAASFLPS LDPRLSQFGV GAAIYPQRPG 420 EIECDYYMKT GQCKFAERCR FHHPIDRSAP IASVNKQAQQ AVKLSLAGLP RREGSVACPF 480 YMKTGTCKYG AMCRFDHPPP GEAIAMSTIQ ESGEVEKDEA EIGQ

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MSNQIYYGST YTSGGVGGYT LRAADPYLPS AIGSSRYSTD GFAIADVGER TSSLSSSQTN  60
GLKLSSVEIR GVGGGGSYSL GKIGGAPTSM SWLGVDGLSD VGSKRSAEAL YNQSILAYNT  120
IGQSDALLSK YSLVKRPRVV SASHLPLYPE RPGEKDCAYY MMTRTCKFGD ACKFDHPIWV  180
PEGGIPDWKE VPHNPAPESL PERPGEPDCP YFLKTQKCKY GLNCKFNHPK EKLDSSTGVV  240
QSNEIYANSE LPERPSEPVC AFYAKTGKCK FGGNCKFHHP KDTLIQSAGK DIGSAANNEP  300
TTNNDNATNG YSKQTKTFIP FTPALWHNSK GLPIRPGETD CPFYLKTGSC KYGATCRYSH  360
PDRYLISTPV TANINNAIIT PPVATVPVGV INPAASFLPS LDPRLSQFGV GAAIYPQRPG  420
EIECDYYMKT GQCKFAERCR FHHPIDRSAP IASVNKQAQQ AVKLSLAGLP RREGSVACPF  480
YMKTGTCKYG AMCRFDHPPP GEAIAMSTIQ ESGEVEKDEA EIGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-174	C3H family protein