PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020672380.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family CAMTA
Protein Properties Length: 228aa    MW: 25979.4 Da    PI: 9.6285
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020672380.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.81.6e-56221383118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl+++ei++iL n++k+ ++ e++++p+sgsl+L++rk++ryfr+DG++w+kkkdgktv+E+hekLK g+++vl+cyYah+e+++ fqr
  XP_020672380.1  22 QEaQHRWLRPTEICEILRNYHKFCIAPEPPNKPTSGSLFLFDRKVLRYFRRDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEDKEGFQR 116
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+Le +l +ivlvhy+evk
  XP_020672380.1 117 RSYWMLEGALMHIVLVHYREVK 138
                     *******************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAVNRRTGVA PVLGEDIEKI LQEAQHRWLR PTEICEILRN YHKFCIAPEP PNKPTSGSLF  60
LFDRKVLRYF RRDGHNWRKK KDGKTVKEAH EKLKAGSIDV LHCYYAHGED KEGFQRRSYW  120
MLEGALMHIV LVHYREVKGS KASFIQQKKD AEAVRNSEFD SPASSNSSAN PSHVPSQFSG  180
YGSRNGTQQS EYEDADSLYL KRSSIHQIIA RQVPDTTLSL RCSGMGLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.23e-73CAMTA family protein