PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672454.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 514aa MW: 58539.9 Da PI: 7.2834

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.8e-18	19	75	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ q+e+Leel+++++yps++++ e Akk+gL+e+qV+ WF+ rR ke+k XP_020672454.1 19 KQKRKLKTPAQVEALEELYNEHKYPSEAMKLEFAKKIGLSEKQVSGWFCHRRLKERK 75 679999*************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MEGSHVAMQK EGETSSHEKQ KRKLKTPAQV EALEELYNEH KYPSEAMKLE FAKKIGLSEK 60 QVSGWFCHRR LKERKILQGE IYTNGKQNLS SSGIHDLISG IKQESCSSTK QVDRNLDSKE 120 VESKMYYAYK SSSDALACEA HNKHPHIGNN HVAEDRSSGG NSASQGSLLQ SNENLYVAQP 180 SRYKLCDDSS LLMSNKNTVI KSEDHLVNPR YSFLQDETDS PAISALKWNL GRHYREDGPL 240 LSFEFDPLPP GAFDSPVRDS KCEPYYVGDS MQHDSSSFYR SINEHRVYDK YYAEKLASEA 300 CQEQRSSKRT KPGFIDSNEI TNLGSTQNAI PNHVQYQAIS IDETEKSMNR TSCFDGRNNL 360 RFLNSKTEWG YGCKDGYNVQ QNSQSTNIKN YFPCPNYDTE VFQGEYFDTK PFVAAPKKYD 420 SISSECWHQP QKILKDNTRN ENTKRNHSAI QPDMFIKSRN NRIEKVNGIG LWKQQCPVKG 480 LEKPARQVPL IRHHLDVDSN LHQDVSGDTS LSLD

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MEGSHVAMQK EGETSSHEKQ KRKLKTPAQV EALEELYNEH KYPSEAMKLE FAKKIGLSEK  60
QVSGWFCHRR LKERKILQGE IYTNGKQNLS SSGIHDLISG IKQESCSSTK QVDRNLDSKE  120
VESKMYYAYK SSSDALACEA HNKHPHIGNN HVAEDRSSGG NSASQGSLLQ SNENLYVAQP  180
SRYKLCDDSS LLMSNKNTVI KSEDHLVNPR YSFLQDETDS PAISALKWNL GRHYREDGPL  240
LSFEFDPLPP GAFDSPVRDS KCEPYYVGDS MQHDSSSFYR SINEHRVYDK YYAEKLASEA  300
CQEQRSSKRT KPGFIDSNEI TNLGSTQNAI PNHVQYQAIS IDETEKSMNR TSCFDGRNNL  360
RFLNSKTEWG YGCKDGYNVQ QNSQSTNIKN YFPCPNYDTE VFQGEYFDTK PFVAAPKKYD  420
SISSECWHQP QKILKDNTRN ENTKRNHSAI QPDMFIKSRN NRIEKVNGIG LWKQQCPVKG  480
LEKPARQVPL IRHHLDVDSN LHQDVSGDTS LSLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-46	HB-other family protein