PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672489.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 255aa MW: 27124.8 Da PI: 6.1593

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.1	9.4e-36	44	130	6	89
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..k 89 +r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a++ai ++tgt++++a ++ +++ ++ ++++ ++ + XP_020672489.1 44 KRSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEHAIFAATGTGTIPAIATnVNGTLKVPTEAPAAAsiS 130 79**********************************************************999994443222222222211111111 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MDSQEKEMED DNGTSISVDR RIIPKSEPLE TIETPLPIVQ IPAKRSKDRH TKVEGRGRRI 60 RMPAACAARI FQLTRELGHK SDGETIRWLL QHAEHAIFAA TGTGTIPAIA TNVNGTLKVP 120 TEAPAAASIS QAEDDAGKKR KKLQPMRGSD RPLIPSGGAI SIPAGLAPIT PMWAIAGGGA 180 AMVAPGAVWM LPSSQMWGFP AGSMIVGGGQ EDGSPTAAGG KQELQLMRET AETQEEGREE 240 EEVSRGPPSE KVPDK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	142	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	7e-40	TCP family protein