PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020672585.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 361aa    MW: 41830.4 Da    PI: 7.3075
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020672585.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.3e-2161147390
            FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Y++YA++  Fsvrk++++   ++ +i++++fvCsk g+++e++k+  k + ++++trt C a+++   ++dg w+v++ ++ HnHela
  XP_020672585.1  61 YCQYAYSHSFSVRKEHHSFWPNSMKIKSKDFVCSKAGFKKETEKN-MKVKFRKSTTRTRCPAMVRFAVSEDGIWMVKRSVESHNHELA 147
                     99*****************************************99.9999999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MTIYSNAPVD GDRALINVPI SIVDKETLLA QFASKDKMGV QGDWLIDYGS RRHEKEAYDK  60
YCQYAYSHSF SVRKEHHSFW PNSMKIKSKD FVCSKAGFKK ETEKNMKVKF RKSTTRTRCP  120
AMVRFAVSED GIWMVKRSVE SHNHELAKPD DQHLLRSSRG VENLGFTKRD AYNYIQKKKR  180
AKIENGDANS LIELFKDRTD SDNMFAWDVQ TDEEDRVTFL SGETIDSFSW LFRTFLKIME  240
SKHPFTIFTD QDQAMARAIE IVLPNTRHSC FSKFNSEEEF DSLWNEMIRE GNLQGHQWLK  300
DLTEVQGNED AEQCMIDSMS AMALNVQNIM EGKKINAYLR GATKQLKILQ SAGQRESLML  360
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-22FAR1 family protein