PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672591.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 27717.1 Da PI: 4.5394

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672591.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.4e-20	50	101	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +eq+++Le++Fe +++++ e++++LA++lgL+ rqV vWFqNrRa++k XP_020672591.1 50 RRLGTEQVRALERCFEVENKLDPERKARLAQELGLQPRQVAVWFQNRRARWK 101 46789**********************************************9 PP
2	HD-ZIP_I/II	129.2	1.6e-41	48	139	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrl +eqv++LE++Fe e+kL+perK++la+eLglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l+ + ++L++++++L +el++ XP_020672591.1 48 KKRRLGTEQVRALERCFEVENKLDPERKARLAQELGLQPRQVAVWFQNRRARWKTKQLERDFATLKSRYDTLRIDFDALRRDNHSLLAELAD 139 9*************************************************************************************999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MKRPAASDSI ITPFFSSEER GEMVLEEEDD DDEICCAAEG GGVGGGLKKR RLGTEQVRAL 60 ERCFEVENKL DPERKARLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDFA TLKSRYDTLR 120 IDFDALRRDN HSLLAELADL KSKLGPVTAV DNELVVAAAK LEEEKKEVVR PFPPPVMAGD 180 GSSDSDSSVV LTDDNRLEGG LVYQAQQMFK IEEHSFFGGE EPCSASFFSD EHVPTLTWFC 240 TDLTGGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	79	ERKARLA
2	96	104	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-45	HD-ZIP family protein