PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020672647.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 341aa    MW: 38861.6 Da    PI: 10.0175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020672647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011107129123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C  Cg+ F  +s L +H ++H
  XP_020672647.1 107 YICRVCGRNFFVHSRLLNHFKMH 129
                     89******************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MLPLFRRIDR PFSRFLFSCS HHRTLVTSSS SVDSRAGAPP VAVFWDLDNK PPKSIRAYDA  60
AVRLRLAASS LGPLRFVAAY ATPQEFRHVP APVGTSRLEE SVPSDHYICR VCGRNFFVHS  120
RLLNHFKMHE REHAKRLRRL DSATGGRYVR LKAQLNLKMD KYRKVAREIL IPRVGYGFGD  180
ELQRAGVSVR IVEDRPGAAD RALKEHMVET MDRRRVGCLV LVSDDTGFMG VIREARMRCL  240
KTVVMGDDGN GALKRCADAS FSWKEVVSGK ARKNAASAVL KWNDKDLLRK LEWRYLPELE  300
PKESKCNGSE WEDIDSRDES ASDGCENLMD ERVSKPWWKL D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.19e-93C2H2 family protein