PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672795.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 1104aa MW: 121674 Da PI: 7.0478

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	7e-41	172	249	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ XP_020672795.1 172 MCQVDDCKADLSNAKDYHRRHKVCELHSKTAKALVGKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 249 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1104 aa Download sequence
MMEGEVDAGV APPIFLHNQA LPGRFSNASS MARKRDLPWG NTGFHHVHQK QESQHWLMGS 60 GLPAPSNSNS WNPKMWEWDS VRFSSKPSED VPEVSCLGTQ GVAAVVNNGS CVEQRKNAGE 120 SGKALLLRDT VEECENLALK LGGGGCRVEE QVQRANKRVR SGSPGSAASY PMCQVDDCKA 180 DLSNAKDYHR RHKVCELHSK TAKALVGKQM QRFCQQCSRF HPLTEFDEGK RSCRRRLAGH 240 NRRRRKTQPE DASTTNLVPG IQDGKASGSV DIVNLLAILA RLQGKPTSMS PLPDGDQLIQ 300 IINKIGSLPP TNPSSKTPVQ RGFDLNVSQA PVQSSSEQPS QGRGNPNIPS TMNLLGVLSA 360 ALASSNPNVL ASMSQESSGG NGSNKSTGLR QEAIDSNNPQ IKVDHVFRPS IDRETDFNVH 420 SQLNSTERSI QIAMPSLPLQ LFGSAEDDSP PKLGSAIKYP SSESSNPIED RSPSCSPPIA 480 KRLFPLRSVS DKKDESMSIC REDHAVAEAS TTCGWMPPLE LFKDLDRQLD NQTVQNMPYS 540 GGGYSSSSGS DQSPSSSNCA VQDRTGRIIF KLFDKDPSDL PGTLRSEILN WLSRSPTEIE 600 SYIRPGCVVL SVYLCMTSAA WHELEEDFLQ RVISLVNCSG SEFWRNLRFL VSTSRQIVSH 660 KDGKIRLCKS WRSLTAPELT SISPIAVLSG QETTLILRGR NLTIPGTKIH CTYKGGYSSK 720 EVLGSTHPGT IYDDSSSESF ILPKESPSSY GRYFVEVDNG FRGNSFPIII ADATICEELR 780 SLEVEFDEDV GTLDAISQDV CLENRRVQSR EDTLHFLNEL GWLFQRKNHP EFSFVDFATS 840 RFNYLFSFSV ERDLSALVKM FLDILVERSY GSDDSVLNES LELLLELQLL SRAVKKKCRK 900 MVELLLNYSV KNAITKDSRM HLFPPNSTGP GGLTPLHLAA SMQDAEDMVD ALTSDPQEIG 960 LNCWVSVMDD SGHSPSMYAS ARNNSYNMLV ARKLADKNNS QISIIIRHED KSMDNMCVEA 1020 KSAVKHSNSC GVEAMAISSC PHCVIAESRL VRINRHRGLL ERPYVHSLLA IAAVCVCVCL 1080 FFRGAPFVGS IAPFKWENLD FGPR

Sequence ? help Back to Top

Protein Sequence Length: 1104 aa Download sequence

MMEGEVDAGV APPIFLHNQA LPGRFSNASS MARKRDLPWG NTGFHHVHQK QESQHWLMGS  60
GLPAPSNSNS WNPKMWEWDS VRFSSKPSED VPEVSCLGTQ GVAAVVNNGS CVEQRKNAGE  120
SGKALLLRDT VEECENLALK LGGGGCRVEE QVQRANKRVR SGSPGSAASY PMCQVDDCKA  180
DLSNAKDYHR RHKVCELHSK TAKALVGKQM QRFCQQCSRF HPLTEFDEGK RSCRRRLAGH  240
NRRRRKTQPE DASTTNLVPG IQDGKASGSV DIVNLLAILA RLQGKPTSMS PLPDGDQLIQ  300
IINKIGSLPP TNPSSKTPVQ RGFDLNVSQA PVQSSSEQPS QGRGNPNIPS TMNLLGVLSA  360
ALASSNPNVL ASMSQESSGG NGSNKSTGLR QEAIDSNNPQ IKVDHVFRPS IDRETDFNVH  420
SQLNSTERSI QIAMPSLPLQ LFGSAEDDSP PKLGSAIKYP SSESSNPIED RSPSCSPPIA  480
KRLFPLRSVS DKKDESMSIC REDHAVAEAS TTCGWMPPLE LFKDLDRQLD NQTVQNMPYS  540
GGGYSSSSGS DQSPSSSNCA VQDRTGRIIF KLFDKDPSDL PGTLRSEILN WLSRSPTEIE  600
SYIRPGCVVL SVYLCMTSAA WHELEEDFLQ RVISLVNCSG SEFWRNLRFL VSTSRQIVSH  660
KDGKIRLCKS WRSLTAPELT SISPIAVLSG QETTLILRGR NLTIPGTKIH CTYKGGYSSK  720
EVLGSTHPGT IYDDSSSESF ILPKESPSSY GRYFVEVDNG FRGNSFPIII ADATICEELR  780
SLEVEFDEDV GTLDAISQDV CLENRRVQSR EDTLHFLNEL GWLFQRKNHP EFSFVDFATS  840
RFNYLFSFSV ERDLSALVKM FLDILVERSY GSDDSVLNES LELLLELQLL SRAVKKKCRK  900
MVELLLNYSV KNAITKDSRM HLFPPNSTGP GGLTPLHLAA SMQDAEDMVD ALTSDPQEIG  960
LNCWVSVMDD SGHSPSMYAS ARNNSYNMLV ARKLADKNNS QISIIIRHED KSMDNMCVEA  1020
KSAVKHSNSC GVEAMAISSC PHCVIAESRL VRINRHRGLL ERPYVHSLLA IAAVCVCVCL  1080
FFRGAPFVGS IAPFKWENLD FGPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein