PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672817.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 252aa MW: 28408.3 Da PI: 9.8335

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.9e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed+ll ++ +G g W+t++ + g++R++k+c++rw++yl XP_020672817.1 14 KGAWTTVEDKLLTAFINIHGEGKWTTVPYKAGLKRSGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.2	3.3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE +l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_020672817.1 67 RGNFSEEENDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 89******************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRNSCSFKE GLNKGAWTTV EDKLLTAFIN IHGEGKWTTV PYKAGLKRSG KSCRLRWLNY 60 LRPNVKRGNF SEEENDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKIASFQH 120 QPHQPSRPSI IQRPPASNLI FPSPSSSTPS QATNNDKTLI RTTAIRCNNV IIPMQLPSSS 180 TSKKDIPSMQ LAEESMAKVA SDMPKSSKVG PMVEEELFKE FFQLDENMVL NYNSFDDDTN 240 VAFPTQASVM EF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	7e-57	MYB family protein