PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672920.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 409aa MW: 45540.8 Da PI: 6.8141

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.2e-41	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCevhsk+p vlv g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ XP_020672920.1 97 CLVDGCRNDLSNCREYHRRHKVCEVHSKTPIVLVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MEWDLKMPPW DLSEFEQNAG EANLSSVIVS SENTPGRQSG GIDCSVDLKL GGLGDFGLVD 60 KWKEEKRAST MVPQSPVSSS SLKRPRAPIG GSQKVSCLVD GCRNDLSNCR EYHRRHKVCE 120 VHSKTPIVLV GGQEQRFCQQ CSRFHLLVEF DEVKRSCRKR LDGHNRRRRK PQPDCINSGN 180 LFPNQHEIRF TSYPQIFPSA AADTSWSPII KSEEDSLYSH HNPPSMQFMD RVQEPPPQNF 240 TTCFNRSFKE GKRLSFLHDG DDDMALNSRT AKTISSAAES SRHKIIFSDG LPPVLDSDCA 300 LSLLSSSNQT SGINMGHMVP VDRIPMGQPL PSCLQYSSTS LQRYSRSQAA SDNVSPTGFS 360 CSTRVENEHL STVLVSDASE AHLHCQNIFN VGDEGPSDEA SHSLHFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MEWDLKMPPW DLSEFEQNAG EANLSSVIVS SENTPGRQSG GIDCSVDLKL GGLGDFGLVD  60
KWKEEKRAST MVPQSPVSSS SLKRPRAPIG GSQKVSCLVD GCRNDLSNCR EYHRRHKVCE  120
VHSKTPIVLV GGQEQRFCQQ CSRFHLLVEF DEVKRSCRKR LDGHNRRRRK PQPDCINSGN  180
LFPNQHEIRF TSYPQIFPSA AADTSWSPII KSEEDSLYSH HNPPSMQFMD RVQEPPPQNF  240
TTCFNRSFKE GKRLSFLHDG DDDMALNSRT AKTISSAAES SRHKIIFSDG LPPVLDSDCA  300
LSLLSSSNQT SGINMGHMVP VDRIPMGQPL PSCLQYSSTS LQRYSRSQAA SDNVSPTGFS  360
CSTRVENEHL STVLVSDASE AHLHCQNIFN VGDEGPSDEA SHSLHFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	171	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	4e-45	SBP family protein