PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020672921.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 401aa MW: 44632.8 Da PI: 6.7759

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020672921.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.4	3.1e-41	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCevhsk+p vlv g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ XP_020672921.1 97 CLVDGCRNDLSNCREYHRRHKVCEVHSKTPIVLVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MEWDLKMPPW DLSEFEQNAG EANLSSVIVS SENTPGRQSG GIDCSVDLKL GGLGDFGLVD 60 KWKEEKRAST MVPQSPVSSS SLKRPRAPIG GSQKVSCLVD GCRNDLSNCR EYHRRHKVCE 120 VHSKTPIVLV GGQEQRFCQQ CSRFHLLVEF DEVKRSCRKR LDGHNRRRRK PQPDCINSEI 180 RFTSYPQIFP SAAADTSWSP IIKSEEDSLY SHHNPPSMQF MDRVQEPPPQ NFTTCFNRSF 240 KEGKRLSFLH DGDDDMALNS RTAKTISSAA ESSRHKIIFS DGLPPVLDSD CALSLLSSSN 300 QTSGINMGHM VPVDRIPMGQ PLPSCLQYSS TSLQRYSRSQ AASDNVSPTG FSCSTRVENE 360 HLSTVLVSDA SEAHLHCQNI FNVGDEGPSD EASHSLHFSW Q

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MEWDLKMPPW DLSEFEQNAG EANLSSVIVS SENTPGRQSG GIDCSVDLKL GGLGDFGLVD  60
KWKEEKRAST MVPQSPVSSS SLKRPRAPIG GSQKVSCLVD GCRNDLSNCR EYHRRHKVCE  120
VHSKTPIVLV GGQEQRFCQQ CSRFHLLVEF DEVKRSCRKR LDGHNRRRRK PQPDCINSEI  180
RFTSYPQIFP SAAADTSWSP IIKSEEDSLY SHHNPPSMQF MDRVQEPPPQ NFTTCFNRSF  240
KEGKRLSFLH DGDDDMALNS RTAKTISSAA ESSRHKIIFS DGLPPVLDSD CALSLLSSSN  300
QTSGINMGHM VPVDRIPMGQ PLPSCLQYSS TSLQRYSRSQ AASDNVSPTG FSCSTRVENE  360
HLSTVLVSDA SEAHLHCQNI FNVGDEGPSD EASHSLHFSW Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	171	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-44	SBP family protein