PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020672983.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 310aa    MW: 36075.8 Da    PI: 9.6357
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020672983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.51.4e-1920107699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++d l+++ + +p + a++ ++ k     + l+ +sg++Wevkl  ++k++r ++++GWkeFvk++++ e D +vFk+ g+s+f  ++ +f+k
  XP_020672983.1  20 FTADELSEK-MAFPLQLASSREIAK-FAELIYLKGPSGNQWEVKL--SRKGDRLYFEDGWKEFVKDHHVMEDDYLVFKYCGKSCF--TILFFDK 107
                     467777776.999999998886654.6679***************..*********************************99***..8887776 PP
2B350.34.3e-16216308198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f+ vlt+s+  ++ +lv+p +f+ ++++   +++ ++l++++ ++W v++  ++ + + +l   Wk Fvk+n+ +egD++vF+l+ +  +  +vv
  XP_020672983.1 216 FLEVLTTSSIRTKFILVIPEDFVMDFKLF--NPQIIILQNLRKKEWLVEY--TRLGLSWILL--WKTFVKDNNFREGDVCVFELTVTrPKMVMVV 304
                     7899*******************999777..4558***************..8888888888..*******************995559999999 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++fr
  XP_020672983.1 305 HIFR 308
                     9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MRLRKWEHLE MNSLQFVIKF TADELSEKMA FPLQLASSRE IAKFAELIYL KGPSGNQWEV  60
KLSRKGDRLY FEDGWKEFVK DHHVMEDDYL VFKYCGKSCF TILFFDKNGC ESPSSYFVKK  120
GRVSASTKLL QAKQKYMSKS SEVNECSTTK VGDFYGEQFS SDDDTFSGGF YSSGTSHSKR  180
EILPEKSKKK MKKNSLQAEA RALNLAKSIS KRNPCFLEVL TTSSIRTKFI LVIPEDFVMD  240
FKLFNPQIII LQNLRKKEWL VEYTRLGLSW ILLWKTFVKD NNFREGDVCV FELTVTRPKM  300
VMVVHIFRAC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-26B3 family protein