PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020673109.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 188aa    MW: 20269.3 Da    PI: 7.3644
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020673109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.71e-43221211100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C++dC++apyfpa++p+kfa vhk+FGasnv+kll++l+  +r+da+sslvyeA+ar+rdPvyG+v+ i++lq+q++ l+a+la
  XP_020673109.1  22 PCAACKLLRRRCVQDCIFAPYFPADEPQKFATVHKVFGASNVSKLLQELSMVQRSDAVSSLVYEANARVRDPVYGCVASISSLQRQINLLHAQLA 116
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_020673109.1 117 LAQAE 121
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MEREGREMVA RKQGSGGAAV SPCAACKLLR RRCVQDCIFA PYFPADEPQK FATVHKVFGA  60
SNVSKLLQEL SMVQRSDAVS SLVYEANARV RDPVYGCVAS ISSLQRQINL LHAQLALAQA  120
EIVHLHLQNA ALFACTSTVA MAPLCSDATA SANTSQSVID SGNINEKTIF SIDMLLDHAN  180
IGLPMWSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.19e-61LBD family protein