PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673218.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 656aa MW: 72002.7 Da PI: 6.2671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673218.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	471	516	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_020673218.1 471 NHVEAERMRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAISYINEL 516 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MNLWTDDNAS MMEAFMASTD LHGLPWTPTP TSLNNNSTPL SGMSGTAATP AYFTQETLQQ 60 RLQMLIEGGR ESWTYAIFWQ SSNDVGSGAN LLGWGDGYYK GSEEGKKKRK VSTAASAAEQ 120 EHRKRVLREL NSLISGGSSG SSPDDAVEEE VTDTEWFFLV SMTQSFINGH GLPGQAYLSG 180 TPSWFSGIDR PTMASCERAR QAQELGIQTM VCVPVGTGVV EFGSTEVIFH SAEMMNKVKA 240 LFVFNGHDSS AAEVPWLPPA VAEQVDANPS TMWISDPSVI QIKDSVSPPT AISASQAPIR 300 LDKPSTSGLT ESRNSIPIQQ TLQNRHQSVN QQHPFYSREF NSSDFTRNNA TPYQPSKPES 360 RDVLNFGESK RNSFSSSPSV QQQIPDDKKI KKAAVDTTSR GSNEEGMLSF SSAPARQVST 420 GHGKASAAAD SDHSDLDASV REAESSRVVE PEKRPRKRGR KPANGREEPL NHVEAERMRR 480 EKLNQKFYAL RAVVPNVSKM DKASLLGDAI SYINELRSKL QSLESDKEGL QSQLESLKEE 540 SDAGPSRPLP PLLAATAEHE LKLMNGYGRT AGVEIEVKLL GVEAMIRIQC QRRNHPAARL 600 MATLKDLDLE LYYASVSVVK DLMILQATVK MSSCGYTQEQ LSSMLFSRVA DPILRR

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MNLWTDDNAS MMEAFMASTD LHGLPWTPTP TSLNNNSTPL SGMSGTAATP AYFTQETLQQ  60
RLQMLIEGGR ESWTYAIFWQ SSNDVGSGAN LLGWGDGYYK GSEEGKKKRK VSTAASAAEQ  120
EHRKRVLREL NSLISGGSSG SSPDDAVEEE VTDTEWFFLV SMTQSFINGH GLPGQAYLSG  180
TPSWFSGIDR PTMASCERAR QAQELGIQTM VCVPVGTGVV EFGSTEVIFH SAEMMNKVKA  240
LFVFNGHDSS AAEVPWLPPA VAEQVDANPS TMWISDPSVI QIKDSVSPPT AISASQAPIR  300
LDKPSTSGLT ESRNSIPIQQ TLQNRHQSVN QQHPFYSREF NSSDFTRNNA TPYQPSKPES  360
RDVLNFGESK RNSFSSSPSV QQQIPDDKKI KKAAVDTTSR GSNEEGMLSF SSAPARQVST  420
GHGKASAAAD SDHSDLDASV REAESSRVVE PEKRPRKRGR KPANGREEPL NHVEAERMRR  480
EKLNQKFYAL RAVVPNVSKM DKASLLGDAI SYINELRSKL QSLESDKEGL QSQLESLKEE  540
SDAGPSRPLP PLLAATAEHE LKLMNGYGRT AGVEIEVKLL GVEAMIRIQC QRRNHPAARL  600
MATLKDLDLE LYYASVSVVK DLMILQATVK MSSCGYTQEQ LSSMLFSRVA DPILRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	111	KKKRKV
2	453	461	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-140	bHLH family protein