PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673262.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LSD

Protein Properties

Length: 174aa MW: 18322.3 Da PI: 8.3331

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	27.7	4.4e-09	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+Y sVRCa+C+t+ XP_020673262.1 7 CSGCRSLLRYESVTNSVRCAICNTI 31 ***********************97 PP
2	zf-LSD1	42.7	9.2e-14	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+ +L+Y rGA+sVRC++C+t+ XP_020673262.1 46 CGGCHRMLMYARGATSVRCSCCNTI 70 ***********************97 PP
3	zf-LSD1	34.4	3.7e-11	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C+t+L YP GAp V+CalC++V XP_020673262.1 84 CAQCHTMLVYPHGAPCVKCALCNFV 108 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence
MPGELVCSGC RSLLRYESVT NSVRCAICNT ITPVLLQSQD AAQLVCGGCH RMLMYARGAT 60 SVRCSCCNTI NHARSANQLA HVNCAQCHTM LVYPHGAPCV KCALCNFVTS VATNSGMVPI 120 LVNMPNGATP THPSTSAPLP NSNNQTVVVE NPMSMDQSGK LVTNVVVGVT TGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-43	LSD family protein