PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020673448.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25633.9 Da    PI: 9.3246
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020673448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.5e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien +nrqvt+skRr+gi+KKA+EL vLCda+ ++++fsstgk+ ey+s
  XP_020673448.1  9 KKIENPTNRQVTYSKRRAGIMKKASELTVLCDAQLSLVMFSSTGKFSEYCS 59
                    68***********************************************96 PP
2K-box91.41.6e-3071169199
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq+ sg +l++a++e++q+ l+ Lk+ ++nL+re+R+++GedL+ L++keL+ Leq+++++lk +R++K++++ +q+++ +kk k+ qe++++L 
  XP_020673448.1  71 YQQVSGINLWSAQYEKMQNTLNHLKEINHNLRREIRQRMGEDLDGLEIKELRGLEQNMDEALKLVRNRKYHVISTQTDTYKKKLKNSQETHRNLL 165
                     7899999***************************************************************************************9 PP

           K-box  96 kkle 99 
                     +++e
  XP_020673448.1 166 REME 169
                     9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MGRGKIEIKK IENPTNRQVT YSKRRAGIMK KASELTVLCD AQLSLVMFSS TGKFSEYCSP  60
STDSKSIYDR YQQVSGINLW SAQYEKMQNT LNHLKEINHN LRREIRQRMG EDLDGLEIKE  120
LRGLEQNMDE ALKLVRNRKY HVISTQTDTY KKKLKNSQET HRNLLREMET EHAVYYVDDD  180
PSNYDGALAL GNGASYLYSF RTQPSQPNLQ GMGYGPHDLR LA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-67MIKC_MADS family protein