PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673470.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MIKC_MADS

Protein Properties

Length: 223aa MW: 25771.6 Da PI: 8.3163

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.2	4.3e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLC+ae+ +i+fs++gklye+ss XP_020673470.1 10 RIENPTSRQVTFSKRRNGLLKKAFELSVLCEAEIGLIVFSPRGKLYEFSS 59 8***********************************************96 PP
2	K-box	70	7.7e-24	80	170	7	97
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ +e++ e+++++ + + k+i+ L+ ++R+l+Ge+Les+s +eL++Le qLe+s++k+R +Kn+ll eq+ +l+++e+ l een L+k+ XP_020673470.1 80 SKSTEQNIEQWKKDTDLMSKKIDALEDSKRKLMGENLESCSTEELHELEIQLEQSISKVRGRKNHLLEEQVVQLKERERVLLEENALLQKQ 170 347899********************************************************************************99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MVRGRTEMRR IENPTSRQVT FSKRRNGLLK KAFELSVLCE AEIGLIVFSP RGKLYEFSSS 60 SMLKTIERYK MNNKEMIINS KSTEQNIEQW KKDTDLMSKK IDALEDSKRK LMGENLESCS 120 TEELHELEIQ LEQSISKVRG RKNHLLEEQV VQLKERERVL LEENALLQKQ EGHTTSLLWK 180 EPLLCLNTSK EVGPQCDNKG MDVETELYVG WPGGGRTQQL LKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	2e-59	MIKC_MADS family protein