PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673563.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 285aa MW: 31722.9 Da PI: 8.5742

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673563.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.8	9.1e-09	3	22	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tG C++G+ CkF+H++ XP_020673563.2 3 HYLETGKCNFGPACKFHHPK 22 8*****************96 PP
2	zf-CCCH	35.5	1.7e-11	44	68	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f++ tG+CkyG +CkF+H++ XP_020673563.2 44 EVDCKFYLSTGWCKYGKTCKFNHPE 68 689********************96 PP
3	zf-CCCH	42.7	9.5e-14	160	184	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ffa+tG Ck+G+rC+F+H+ XP_020673563.2 160 DEPDCPFFAKTGSCKFGSRCRFNHP 184 6899********************8 PP
4	zf-CCCH	30.1	8.2e-10	205	230	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ r G+C+yG++CkF H+ XP_020673563.2 205 PGEPKCSFYGRHGYCRYGSTCKFDHP 230 57899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MGHYLETGKC NFGPACKFHH PKDIPGIIKP VQFNALGYPL RQYEVDCKFY LSTGWCKYGK 60 TCKFNHPEPS NSMHWWLSRT TPGQTLFPGE LTSFNASPHW QVPSSYVQVV YPQGFAQVPS 120 WNTFPYYLNQ QQYYGNDQFV GSGAAMDPPA SYSSFPVRPD EPDCPFFAKT GSCKFGSRCR 180 FNHPIGQITL TSNCELSPMG LPLRPGEPKC SFYGRHGYCR YGSTCKFDHP IAAPNVPVVR 240 QPLESSSGPA TLTLSAESSS VASPGKLKCL PSSKRQKMNS DDEKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	4e-66	C3H family protein