PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673665.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CPP

Protein Properties

Length: 637aa MW: 69924.4 Da PI: 8.6498

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673665.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.9	4.7e-14	148	187	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnC++skClk+YCeCfa+g++C+ C+C++C+N+ e+ XP_020673665.1 148 NQKQCNCRNSKCLKLYCECFASGVYCNG-CSCTNCSNNVEN 187 789***********************.******9875 PP
2	TCR	49.9	6.4e-16	232	272	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN +e XP_020673665.1 232 KHNKGCHCKKSGCLKKYCECFQAKILCSENCKCVDCKNFKE 272 589***********************************877 PP

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence
MGLLSVPVAG EKAVVSPQAG TYGYPDLVVR IAPDSLPTTP RKACIGDLPV RYELRRRIWN 60 HGSLAYLVVG VAPVAPPTTL RKACIGRPPT RHTCRGKRAN KGSISYTFGR RRTSGPAVDV 120 GSDVEEGPGT EAGPRMSINE VEDSTTKNQK QCNCRNSKCL KLYCECFASG VYCNGCSCTN 180 CSNNVENDTV RRDAIEVILE RNPNAFRPKI ASSPHAVGDI KDEVVELPYM VKHNKGCHCK 240 KSGCLKKYCE CFQAKILCSE NCKCVDCKNF KENQATITHV DGHHGNAHAY IPQTANAALN 300 GAIRSSGCGF PASKKRKHPE FPFSTSVNGQ SAHSFVHPLV NSVKASGTAR PAAGSKVQST 360 GSAIQVSKLT YRSLLAGIIQ PEYIRNLCSA LVVQSGQAKT FDDRRLQEEK AAGREDQNKD 420 RHALVGENND DRQNMQDGSN ISAEACSNGI DVDKIIENSG SNICCIQKEG RPMSPGTLAL 480 MCDEPDLNFI SSQNSRKRPR TTCEENFTEI YVKQERIALM KLRDSLYELA NCARMKEENI 540 LMAMRCKNSI NQIPALNKAK SSEEPDNDRA KSINLESVAD KSNLNKKELI IEKRKPISQK 600 LASIKKFCSD DICREQLWVN SERDPSQLEL AKSGASF

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence

MGLLSVPVAG EKAVVSPQAG TYGYPDLVVR IAPDSLPTTP RKACIGDLPV RYELRRRIWN  60
HGSLAYLVVG VAPVAPPTTL RKACIGRPPT RHTCRGKRAN KGSISYTFGR RRTSGPAVDV  120
GSDVEEGPGT EAGPRMSINE VEDSTTKNQK QCNCRNSKCL KLYCECFASG VYCNGCSCTN  180
CSNNVENDTV RRDAIEVILE RNPNAFRPKI ASSPHAVGDI KDEVVELPYM VKHNKGCHCK  240
KSGCLKKYCE CFQAKILCSE NCKCVDCKNF KENQATITHV DGHHGNAHAY IPQTANAALN  300
GAIRSSGCGF PASKKRKHPE FPFSTSVNGQ SAHSFVHPLV NSVKASGTAR PAAGSKVQST  360
GSAIQVSKLT YRSLLAGIIQ PEYIRNLCSA LVVQSGQAKT FDDRRLQEEK AAGREDQNKD  420
RHALVGENND DRQNMQDGSN ISAEACSNGI DVDKIIENSG SNICCIQKEG RPMSPGTLAL  480
MCDEPDLNFI SSQNSRKRPR TTCEENFTEI YVKQERIALM KLRDSLYELA NCARMKEENI  540
LMAMRCKNSI NQIPALNKAK SSEEPDNDRA KSINLESVAD KSNLNKKELI IEKRKPISQK  600
LASIKKFCSD DICREQLWVN SERDPSQLEL AKSGASF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	2e-94	CPP family protein