PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020673689.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 359aa MW: 41561.3 Da PI: 6.5561

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020673689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.8e-05	75	97	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F++ L++H H XP_020673689.1 75 CTydGCGKTFTDAGALRKHTHIH 97 78889**************9887 PP
2	zf-C2H2	17.7	1e-05	102	126	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk F ++s LkrH H XP_020673689.1 102 YVCPveGCGKKFLDSSKLKRHNLIH 126 99*******************8777 PP
3	zf-C2H2	19.3	3e-06	132	156	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk Fs nL+ H++tH XP_020673689.1 132 HYCPyeGCGKAFSLDFNLRAHMKTH 156 679999******************9 PP
4	zf-C2H2	13.6	0.0002	162	187	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp Cgk++++ L++Hi+t H XP_020673689.1 162 HVCPypECGKRYTHECKLNTHIKTqH 187 79**********************99 PP
5	zf-C2H2	14.7	8.6e-05	219	244	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+r+ H XP_020673689.1 219 YVCPfaGCEKAYIHEYKLNLHLRKeH 244 9***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MESYEDRSRL DPKTRSPTVR WVKEWVPQDV VATGGKCYLL KWVTEDKWNA LREKTKELEL 60 QERKPKPATE MFFLCTYDGC GKTFTDAGAL RKHTHIHGER QYVCPVEGCG KKFLDSSKLK 120 RHNLIHTGEK SHYCPYEGCG KAFSLDFNLR AHMKTHSVEN YHVCPYPECG KRYTHECKLN 180 THIKTQHEKD AMVDMRPQEK PSNAAKAPVL NSASSDRPYV CPFAGCEKAY IHEYKLNLHL 240 RKEHPGHNPE EGYKTAPMTA GEHWYGELND QDALLNNKYS KRGKASLSRK LPPAKVAKQR 300 VSSPNPVVSN DAQKRRQNKE LDEDSEETEE DQEEEDEEEE NGWRYLEANR DDEETEDED

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MESYEDRSRL DPKTRSPTVR WVKEWVPQDV VATGGKCYLL KWVTEDKWNA LREKTKELEL  60
QERKPKPATE MFFLCTYDGC GKTFTDAGAL RKHTHIHGER QYVCPVEGCG KKFLDSSKLK  120
RHNLIHTGEK SHYCPYEGCG KAFSLDFNLR AHMKTHSVEN YHVCPYPECG KRYTHECKLN  180
THIKTQHEKD AMVDMRPQEK PSNAAKAPVL NSASSDRPYV CPFAGCEKAY IHEYKLNLHL  240
RKEHPGHNPE EGYKTAPMTA GEHWYGELND QDALLNNKYS KRGKASLSRK LPPAKVAKQR  300
VSSPNPVVSN DAQKRRQNKE LDEDSEETEE DQEEEDEEEE NGWRYLEANR DDEETEDED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-113	C2H2 family protein