PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020673730.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HSF
Protein Properties Length: 322aa    MW: 36944.6 Da    PI: 4.4637
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020673730.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.3e-36381292102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Flkk+++++ed+++++++sws+  nsfvv+d++ fa++vLp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF++++F  g+k+ll++
  XP_020673730.1  38 FLKKTFDMVEDPSTDSIVSWSRARNSFVVWDSHMFATNVLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEEFLGGQKHLLKN 123
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_020673730.1 124 IKRRRN 129
                     ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MEGAFDSIIL VKEEEDEEEE PMLPQPLPGL HDAAPPPFLK KTFDMVEDPS TDSIVSWSRA  60
RNSFVVWDSH MFATNVLPRY FKHSNFSSFI RQLNTYGFRK VDPDRWEFAN EEFLGGQKHL  120
LKNIKRRRNI GQSSSDVGQL ALEGEVEKLR SERQILMLEI MSLRQQQQSS RTHLVAMEER  180
MLVAERKQKQ TMTFLSKVLR NPDFAHKLMA RGEWGMDLGS PGKKRRLPPP FSESLEVTGE  240
AEEFLFRMEN ELTNEVETEA VEQSSEEIMD SMWEDLLSES FDGETSAQEI DAEVEELVAE  300
NCGWGEDVKG LVEAMGFLGS KK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121127LKNIKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-99HSF family protein